These queries allow you to ask specific questions from the database. They take simple inputs like a table name or a search term and then run one or more maxdBrowse queries before formatting and returning a digested result. Links to their code and web-service descriptions are given. This form allows you to choose a query to run from your browser. Taverna users, simply add this workflow file, maxdBrowseServices, using the Workflow scavenger.
| Query Name | files* | description |
|---|---|---|
| ArrayMetadata | m w c s | Will return Feature, Reporter, Gene metadata |
| GEOplatform | m w c s | Will describe an array in softSOFTtext format |
| GEOsample | m w c s | Will describe an sample in softSOFTtext format |
| GEOseries | m w c s | Will describe an experiment in softSOFTtext format |
| GEOseries2platform | m w c s | parses output from GEOseries and returns the samples as a comma-separated list of the samples |
| GEOseries2sample | m w c s | parses output from GEOseries and returns the samples as a comma-separated list of the samples |
| GeneHunterTabTextFAST | m w c s | Will take a list of Gene names, a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. |
| GeneHunterTabTextSLOW | m w c s | Will take a list of Gene names, a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. |
| GeneHunterXHTML | m w c s | Will take a list of Gene names, a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. |
| GeneHunterXHTMLCoreOutput | m w c s | Will take a list of Gene names, a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. |
| GeneHunterXHTMLFASTER | m w c s | Will take a list of Gene names, a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. |
| GetAllMeasurementColumnHeadingMetadata | m w c s | Displays column metadata for each column of the measurements requested. |
| GetAllMeasurementNames | m w c s | Displays the measurement names for a database. |
| GetAllMeasurementNamesAndAttributes | m w c s | Displays the measurement names and attributes for a database. |
| GetAllMeasurementNamesSimpleHTML | m w c s | Displays the measurement names for a database. |
| ListATable | m w c s | List the entries for a given table (without formatting) |
| ListATableFormatted | m w c s | List the entries for a given table (with formatting) |
| ListATableWithAttributes | m w c s | List the entries for a given table (with formatting) |
| ListATableWithAttributesPHPed | m w c s | List the entries for a given table and their attributes |
| MeasurementDataTabTextFAST | m w c s | Will take a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. MeasurementDataTabTextFASTEST is faster because it doesn't export Reporter and Gene information. |
| MeasurementDataTabTextFASTEST | m w c s | Will take a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. MeasurementDataTabTextFAST is slower because it also exports Reporter and Gene information. |
| MeasurementDataTabTextFASTESTTransposed | m w c s | Will take a list of Gene names, a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. |
| MeasurementDataTabTextFASTTransposed | m w c s | Will take a list of Gene names, a list of Measurement names and a list of Column Types and produce a table. All values are coloured in relation to the a reference. In the list of Measurement names, the first Measurement listed is taken to be the reference. Formatted as text. |
| MeasurementReport | m w c s | Gives useful information about a measurement. |
| SchemaStructure | m w c s | Reflects the schema structure of a database |
| SearchSimple | m w c s | Allows you to do a simple search a of entry names in any table |
| SearchThenEnumerateAndFormatHTML | m w c s | This takes some search term to match some gene names, and then retrieves the intensities of these gene for a specified Measurement. Formats as html. |
| SearchThenEnumerateAndFormatTEXT | m w c s | This takes some search term to match some gene names, and then retrieves the intensities of these gene for a specified Measurement. Formats as text. |
| ShowProfiles | m w c s | displays the list of profiles for a particular repository |
| ViewOneField | m w c s | Lists a specific field in a table |
| ViewOrganisms | m w c s | Lists all organisms in database. |