A test workflow using the interproscan service at the EBI. 1001_at org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter sequence uniprot:alk1_human org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter all 0 P 1 alabarga@ebi.ac.uk org.embl.ebi.escience.scuflworkers.java.XMLInputSplitter org.embl.ebi.escience.scuflworkers.java.ByteArrayToString \s///\s org.embl.ebi.escience.scuflworkers.java.SplitByRegex http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl runInterProScan tooloutput http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl poll HMMPfam http://dbk-ed.mib.man.ac.uk:8080/SwissProtFileWorker/services/SwissProtFileWorker?wsdl addInterproFeatures org.embl.ebi.escience.scuflworkers.java.FailIfFalse if (status.equals("DONE")){ finished = "true"; } else { finished = "false"; } status finished http://www.ebi.ac.uk/Tools/webservices/wsdl/WSInterProScan.wsdl checkStatus The UniProt Knowledgebase is a central database of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR. acc http://dbk-ed.mib.man.ac.uk:8080/axis/services/srs_ebi_uniprotsequence.ebi_uniprot http://dbk-ed.mib.man.ac.uk:8080/HumanAffymapper/services/HumanAffymapper?wsdl getSwissProt application/octet-stream chemical/x-swissprot Completed checkStatusWorkflow poll Scheduled Running