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Genetic Algorithm Publications:
Corne, D. W., Oates, M. J. & Kell, D. B. (2003). Fitness gains and
mutation patterns: deriving mutation rates by exploiting landscape
data. In Foundations of Genetic Algorithms 7 (ed. K. A. De Jong, R.
Poli and J. E. Rowe), pp. 347-364. Morgan Kaufmann, Amsterdam.
Corne, D. W., Oates, M. J. & Kell, D. B. (2003). Landscape State
Machines: tools for evolutionary algorithm performance analyses
and landscape/algorithm mapping. In Evoworkshops 2003, vol.
LNCS 2611 (ed. S. Cagnoni, J. R. J. Cardalda, D. W. Corne, J.
Gottlieb, A. Guillot, E. Hart, C. G. Johnson, E. Marchiori, J.-M.
Meyer, M. Middendorf and G. Raidl), pp. 187-198. Springer, Berlin.
Oates, M. J., Corne, D. W. & Kell, D. B. (2003). The bimodal
feature at large population sizes and high selection pressure:
implications for directed evolution. In Recent advances in simulated
evolution and learning (ed. K. C. Tan, M. H. Lim, X. Yao and L.
Wang). World Scientific, Singapore.
Corne, D.W., Oates, M.J. & Kell, D.B. (2002)
On fitness distributions and expected fitness gain of
mutation rates in parallel evolutionary algorithms.
In Parallel Problem Solving from Nature - PPSN VII.
(eds. J.J. Merelo Guervós, P. Adamidis, H.-G. Beyer,
J.-L. Fernández-Villacañas & H.-P. Schwefel) 132-141
(Springer, Berlin; 2002).
Davies, Z., Gilbert, R.J., Merry, R.J., Kell, D.B., Theodorou, M.K. & Griffith, G.W.
(2000) Efficient improvement of silage additives using genetic algorithms.
Applied and Environmental Microbiology. 66, 1435-1443.
Taylor J., Rowland, J.J., Gilbert, R.J., Jones, A., Winson, M.K. and Kell, D.B.
(1998), Genetic Algorithm Decoding for the Interpretation of Infra-red Spectra
in Analytical Biotechnology, in Technical Report CSRP-98-10 (EuroGP '98
Late-Breaking Papers), School of Computer Science, University of Birmingham.
D. Broadhurst; R. Goodacre; A. Jones; J.J. Rowland and D.B. Kell, Genetic
Algorithms as a Method for Variable Selection in PLS Regression with
Applications to Pyrolysis Mass Spectrometry, Analytica Chimica
Acta 348:71-86 (1997).
Genetic Progamming Publications:
See my list at the
Vaidyanathan, S., D. I. Broadhurst, D. B. Kell, and R. Goodacre. 2003.
Explanatory optimisation of protein mass spectrometry via genetic search. Anal.
Chem. 75:6679-6686.
Allen, J. K., Davey, H. M., Broadhurst, D., Heald, J. K., Rowland, J. J., Oliver,
S. G. & Kell, D. B. (2003). Metabolic footprinting: a
high-throughput, high-information approach to cellular
characterisation and functional genomics. Nature
Biotechnol. 21, 692-696.
Kell, D. B. (2002). Genotype-phenotype mapping: genes as computer
programs. Trends Genet 18, 555-9.
Abstract.
Kell, D.B. (2002)
Metabolomics and machine learning: explanatory
analysis of complex metabolome data using genetic
programming to produce simple, robust rules. Mol.
Biol. Rep. 29, 237-242.
Kell, D. B. (2002). Defence against the
flood: a solution to the data mining and predictive modelling challenges of
today. Bioinformatics World (part of Scientific Computing News) Issue 1, 16-18.
Manuscript version as pdf.
Ellis, D. I., Broadhurst, D., Kell,
D.B, Rowland, J.J. & Goodacre, R. (2002). Rapid and
quantitative detection of the microbial spoilage of
meat using Fourier-Transform infrared spectroscopy and
machine learning. Appl. Env. Microbiol. 68, 2822-2888.
Abstract Pubmed.
Abstract ASM.
Full text at ASM.
Day, J.P., Kell, D.B. & Griffith,
G.W. (2002) Differentiation of Phytophthora infestans sporangia from
other airborne biological particles by flow cytometry. Appl. Env. Microbiol.
68, 37-45.
Abstract.
Full
version in pdf at AEM.
Kell, D.B., Darby, R.M. & Draper, J.
(2001) Genomic computing: explanatory analysis of plant expression profiling
data using machine learning. Plant Physiology 126, 943.951.
Abstract.
Full
paper at Plant Physiology.
Gilbert, R. J., Rowland, J. J. &
Kell, D. B. (2000). Genomic computing: explanatory modelling for functional
genomics. In Proceedings of the Genetic and Evolutionary Computation Conference
(GECCO-2000) (ed. D. Whitley, D. Goldberg, E. Cantú-Paz, L. Spector, I.
Parmee and H.-G. Beyer), pp. 551-557. Morgan Kaufmann, San Francisco.
Johnson,
H.E., Gilbert, R.J., Winson, M.K., Goodacre, R., Smith, A.R., Rowland, J.J.,
Hall, M.A. & Kell, D.B. (2000). Explanatory analysis of the metabolome
using genetic programming of simple, interpretable rules. Genetic
Programming and Evolvable Machines 1(3). 243-258.
Goodacre,
R., Shann, B., Gilbert, R.J., Timmins, É.M., McGovern, A.C., Alsberg,
B.K., Kell, D.B. & Logan, N.A. (2000) The detection of the dipicolinic acid
biomarker in Bacillus spores using Curie-point pyrolysis mass
spectrometry and Fourier-transform infrared spectroscopy. Analytical
Chemistry 72, 119-127.
Goodacre, R.
& Gilbert, R.J. (1999) The detection of caffeine in a variety of beverages
using Curie-point pyrolysis mass spectrometry and genetic programming.
The Analyst 124, 1069-1074.
Woodward,
A.M., Gilbert, R.J. and Kell, D.B. (1999). Genetic programming as an analytical
tool for non-linear dielectric spectroscopy. Biochemistry and
Bioenergetics 48, 389-396.
Gilbert, R.J., Johnson, H.E., Winson, M.K., Rowland, J.J., Goodacre, R., Smith, A.R.,
Hall, M.A. & Kell, D.B. (1999) Genetic programming as an analytical tool
for metabolome data. In EuroGP '99 Late-Breaking Papers: Technical
Report SEN-R9913 (Eds. Langdon, W.B., Poli, R., Nodin, P. & Fogarty,
T.), pp. 23-33. Software Engineering, CWI, Amsterdam.
R. Goodacre;
B. Shann; R.J. Gilbert; É.M. Timmins; A.C. McGovern; B.K. Alsberg; N.A.
Logan and D.B. Kell, The characterisation of Bacillus species from PyMS
and FT IR data. In Proceedings of the 1997 ERDEC Scientific Conference
on Chemical and Biological Defense Research. ERDEC-SP-063, Aberdeen Proving
Ground (1999).
Jones, A., Young, D., Taylor, J., Kell, D.B. & Rowland, J.J. (1998) Quantification of microbial productivity via
multi-angle light scattering and supervised learning. Biotechnol. Bioeng., 59,
131-143. Abstract.
R.J.
Gilbert; R. Goodacre; B. Shann; J. Taylor; J.J. Rowland and D.B. Kell, Genetic
Programming-Based Variable Selection for High-Dimensional Data, Genetic
Programming 1998: Proceedings of the Third Annual Conference (J.R. Koza
et al., eds.), Morgan Kaufmann (1998).
J. Taylor;
M.K. Winson; R. Goodacre; R.J. Gilbert; J.J. Rowland and D.B. Kell, Genetic
Programming in the Interpretation of Fourier-Transform Infrared Spectra:
Quantification of Metabolites of Pharmaceutical Importance, Genetic
Programming 1998: Proceedings of the Third Annual Conference (J.R. Koza
et al., eds.), Morgan Kaufmann, San Fransisco CA (1998).
Taylor, J., Goodacre, R., Wade, W.G.,
Rowland, J.J. & Kell, D.B. (1998) The deconvolution of pyrolysis mass
spectra using genetic programming: application to the identification of some
Eubacterium species. FEMS Microbiology Letters 160, 237- 246. Abstract.
Gilbert, R.J., Goodacre, R., Woodward,
A.M. & Kell, D.B. (1997) Genetic programming: a novel method for the
quantitative analysis of pyrolysis mass spectral data. Anal. Chem. 69,
4381-4389.
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