 |
Google |
 |
|
 |
|
|
Google advanced search. |
|
|
|
|
Genomics |
 |
|
|
|
|
DBCAT
- Encyclopedia
of Life project - Genomics
Glossaries, Y.F.
Leung's Functional Genomics Portal, Pedro's
Biomolecular Research Tools, Omegabase Sequences
and more - portals for all things biological, -Omes Glossary.
EBI
Genome Monitor, EMGL, Genamics, GOLD, Prominent
Organisms at NCBI, ORNL,
TIGR
Microbial Database - indexes of genome sequences.
Nature
Genomics Gateway.
E. coli: COG
at NCBI, Colibri Web
Server, ECDC
E. coli Database Collection (Gießen), Ecogene
(Kenn Rudd), Ecocyc, Genobase (Nara, Japan), Genome
Navigator (Dahlem), IECA Portal
- MIPS/PEDANT.
M. tuberculosis:
H37Rv (Sanger),
MIPS/PEDANT,
Tuberculist.
S. cerevisiae:
MIPS/PEDANT,
Stanford Genome
Database, MIPS CYGD,
Yale
Genome Analysis Center, YPD.
S. coelicolor:
A3(2) at Sanger,
IGF
homepage, UMIST
Microarray Resource, Proteome
Reference Gel |
|
|
Transcriptomics |
|
|
|
|
|
HUMAN
TRANSCRIPTOME PROFILES -
Labs: Pat Brown (Stanford), Leroy Hood Lab
(Seattle), Vivian
Cheung (Phildelphia), EBI
arrayexpress , AECOM,
Ontario
Cancer Institute, Rick
Young (Whitehead),
Chip and Microarray
Companies: Affymetrix,
Agilent, AmershamPharmacia Biotech, Arrayit, Axon Instruments Genepix,
Biorobotics,
Clontech
(Atlas Arrays), Eurogentec,
Corning CMT,
GeneLogic
GeneExpress, Genomic
Solutions, GSI
Lumonics ScanArray, Iobion
Genetraffic, Mergen
ExpressChip, Microarrays.org
Public Database, Oxford Gene
Technology, Origene
RapidScan, Research Genetics,
Stratagene
Gene Connection,
Companies Providing
Bioinformatics Tools: BioDiscovery
Genesight, Gene Data GD
Expressionist, Genedata, GeneLogic Gene Express,
Incyte, Lion Bioscience AG
Array Scout, Research Genetics,
Rosetta
Resolver, Silicon
Genetics Gene Spring.
Analysis Groups: Aberystwyth, Manchester,
Whitehead/MIT,
Stanford,
NHGRI/NIH
Microarray Project.
Data, Ontologies and
Standards: Array XML
working group MGED project, DAML,
EBI
Array Express, GenePix File
Formats, MaxD,
NCGR
GeneX, NCBI Gene
Expression Omnibus, Working
Recommendations on Standards, MAGE-ML.
'Free' software (sometimes
free only for non-commercial use) on the Web: EBI Expression Profiler, Michael Eisen's
Clustering Software, MaxD
View, TIGR Array Viewer,
TM4
including Multi-Experiment Viewer.
Portals: Microarray Data,
Papers and Links at the Rockefeller, Links from the EBI, Many
Transcriptomic Links at Deathstar, Inc., Microarray
Software Links at Stanford, Microarray
Software Comparisons by Yuk Fai Leung, Microarrays.org.
|
|
|
|
Bioscience Departments |
|
|
|
|
|
Biotutor
- quick link to all UK Bioscience Departments |
|
|
Functional Categories for Functional Genomics |
|
|
|
|
|
If the functional genomics agenda is to assign
function or functional
class to genes of unknown function, it is necessary to have a list of
the classes to which one might wish to assign them. The
following therefore lists some websites in which a listing of suggested
functional classes has been given.
Note that many of these classification structures are are strictly
hierarchical and are far from optimal. See Kell, D.B. & King, R.D.
(2000) On the optimization of classes for the assignment of
unidentified reading frames in functional genomics programmes: the need
for machine learning. Trends Biotechnol. 18, 93-98.
Pubmed abstract. The goal of the Gene Ontology consortium
is to bring order and a systematic structure to these terms. Another
comparison of functional annotation schemes has been published by SCG
Rison, TC Hodgman & JM Thornton (2000) Functional and Integrative
Genomics 1, 56-69 - see link here and
a Table of links to other functional catalogues. |
|
|
Network Science |
|
|
|
|
|
Some properties of networks are generic, and we
need tools to study and
understand them. Links to these are on our Systems Biology
page.
 |
Other Links |
 |
|
|
|
|
Many thanks to Iolo for a lot of these...
Rail
Travel
Ferries
etc.
Air
Travel
Travel Agents/Hotels
etc.
Road
Travel/Cars etc.
Aberystwyth
Chirk
London
Manchester
Swindon
Fun
|
|
Last update: 24th
August 2009
|
|
|
Group |
|
|
 |
|
|
Back to the group's homepage. |
|
 |
Webmail 1
|
|
|
 |
|
|
Swindon
webmail. |
|
|
|
|
|
Webmail 2
|
|
|
|
|
|
Manchester
Webmail
|
|
|
